Hi, I am trying to simulate a protein with a DPC micelle. Part of pdb files is:
CRYST1 0.000 0.000 0.000 90.00 90.00 90.00 P 1 1 ATOM 1 N DPC M 1 -16.481 21.283 -0.739 1.00 0.00 MICE ATOM 2 C14 DPC M 1 -15.620 20.082 -1.136 1.00 0.00 MICE ATOM 3 C15 DPC M 1 -17.727 20.772 -0.234 1.00 0.00 MICE ATOM 4 C16 DPC M 1 -15.792 22.061 0.317 1.00 0.00 MICE ATOM 5 C17 DPC M 1 -16.780 22.230 -1.919 1.00 0.00 MICE ATOM 6 H141 DPC M 1 -14.613 20.409 -1.348 1.00 0.00 MICE ATOM 7 H142 DPC M 1 -16.000 19.717 -2.079 1.00 0.00 MICE ATOM 8 H151 DPC M 1 -18.375 21.592 0.038 1.00 0.00 MICE ATOM 9 H152 DPC M 1 -17.513 20.198 0.656 1.00 0.00 MICE But when I use the command pdb2gmx, it is said "Residue 'DPC' not found in residue topology database". How can I deal with it? Thank you. sincerely yours, Wang Qian
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