Hi Hui Sun, Did you verify the integrity of the trajectory with gmxcheck? If not, you should and if you find that the trajectory is not good, show us what's wrong. If the trajectory is not garbled, but is interpreted wrongly by VMD, try the VMD user list.
Tsjerk 2008/7/19 hui sun <[EMAIL PROTECTED]>: > Dear all, > > I am a new user of gromacs. Recently, I have installed the gromacs-3.3.3 > software package on my computer. After installation was complete, I run the > example of water in the online reference manual. The trajectory file is OK > for the first time. But when I run it for the second time, and used vmd to > look at the trajectory, I found that the trajetory is disordered, the frames > in the VMD main are equal to 2, and the output file .gro seems ok. What's > worry with my gromacs? I don't know what to do now and how can I overcome > this. Could you help me? > > Thanks in advance! > > Hui Sun > > > ________________________________ > 雅虎邮箱，您的终生邮箱！ > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623
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