Hi Michael, look for the bionano tutorial at VMD site. It will instruct you how to use TCL to build your SiO surface from an "unit cell". In a near future they will release the "inorganic builder plugin" that will make things a LOT easier.
have fun ! On Tue, Jul 15, 2008 at 9:37 AM, Michael Hirtz <[EMAIL PROTECTED]> wrote: > Hello, > > I want to set up a silicon oxide surface with varying -OH surface group for my > simulation. Does anybody know a tool that could do that or maybe even has a > topology I could start on and alter manually? > > Thanks for any sugesstions, > Michael > -- > http://www.defux.de > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Diego Enry B. Gomes Laboratório de Modelagem e Dinamica Molecular Universidade Federal do Rio de Janeiro - Brasil. _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
