mahesh kulharia wrote:
Hi
I am Newbie her. I wanted to simulate a membrane of POPC with a GPCR in it. I obtained popc128.itp file, popc.pdb file but grompp_d gives me an error saying POP not found in residue topologu database. I would be eternally grateful if someone could guide me or give some hint.

This is a very common error experienced by new users (as are others that you are likely to face), so do search the archive and wiki before posting, I'm sure you'll find the answers there. For example:

http://wiki.gromacs.org/index.php/Errors#Residue_.27XXX.27_not_found_in_residue_topology_database

-Justin


with best regards
newbie


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--
========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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