Biswaranjan Meher wrote:
Dear All,
I have a simple querry regarding the secondary structure analysis.
Using my_dssp I have done the secondary structure analysis for my
protein (all residues) of interest.
But I want to show the secondary structural changes for a / few
particular residues in the protein.
Is it possible to create a .xpm file for a single residue over the
whole period of the simulation ? Or there is some tricky way to do that ?
If yes, can any body suggest me in this regard ?
As with all Gromacs analysis tools, do_dssp can be passed an index file with the
subset of atoms of interest.
-Justin
Thanks in advance for your kind suggestion.
with regards
BR Meher
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--
========================================
Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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