Dear All,
I really apologize for asking a peptide translation related question again. I
have a lipid-peptide system and I have already carried out the production run
for 20ns. The peptide has moved towards one of the edges (I didnt specify
comm-grps in the mdp file). I have to translate the peptide in the center of
the bilayer. While using trjconv it translates the peptide at 0,0,0 but shifts
the lipid and water molecules as well such that eventually the peptide lies
near the edge only!
Is there any other tool which I should be using?
Kindly suggest me something,
Priyanka.
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