Hi gmx-users, I have doubt about grompp and tpbconv commands. I am telling like this If I run grompp each time with interval of 1ns until 10ns md simulations, considered as one system. By using tpbconv eachtime with same interval time 1ns unitl 10ns simulation considered as a another system. Both of these systems contain same molecules,number of atoms,parameters except using grompp and tpbconv. Now these two systems make any difference in RMSD and other analysis.
It seems grompp should use only when change in the parameters or else can use tpbconv for extending the run am i right? Thanks alot for your any suggestions
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