Re: [gmx-users] How to convert gromacs traj file(.xtc) to amber traj file?

[David van der Spoel]

Omer Markovitch wrote:
Are you sure this will be done automaticaly if you'll procide gromacs 
with an output file called filename.trj?
There is also the option of converting into PDB: "trjconv -f traj.xtc -o 
trajtraj.pdb -s coordinates.gro".
omer.

try

trjconv -o blabla.g87 -f something


Koby Levy research group,
Weizmann Institute of Science.
http://www.weizmann.ac.il/sb/faculty_pages/Levy/


On Mon, Sep 8, 2008 at 20:14, ranqi zhu <[EMAIL PROTECTED] 
<mailto:[EMAIL PROTECTED]>> wrote:

    Hi, Everyone,

    I just want to use the clustering tool in amber which only take trj
    file.

    Thanks

    -Ranqi

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--
David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
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