Yes, assuming that you include this file right after you define the
lipid, and assuming that you meant to say CA1(51), and assuming that
your lipid .itp has only a single molecule. You could test this
yourself by running a short segment with and without the restraint and
then taking a look at the trajectory with vmd, or perhaps doing an
absolute RMSD.
Chris.
--- original message ---
Hi gmx-archives,
I want do *PR for popc with restrain specifically on P(8),C(50),CA1(50) of
all popc molecules, I wrote lipidposre.itp file like this
[ position_restraints ]
; atom type fx fy fz
8 1 500 500 500
50 1 500 500 500
51 1 500 500 500
If I mention like this will it restrain above included atoms of all popc?
Any suggestions would be appreciated
Thanks in advance.
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