Hi Sudheer, It depends mainly on what it is you want to look at. You cannot exclude though, that the version has an effect on your results. Therefore you either have to do all simulations using the same version, or you have to randomize the versions over the simulations. I do hope that you meant to do like five simulations per system? Otherwise you won't have statistics anyway and are likely to obtain useless results whatsoever :) Okay, not that black and white, but still, you have to be a bit careful when trying do do proper comparisons. Actually, if you do like six simulations per system and have three of each set with one version and three with the other, you could even test for the effect of the program :p
Cheers, Tsjerk On Tue, Sep 30, 2008 at 9:31 AM, sudheer babu <[EMAIL PROTECTED]> wrote: > Hi Users, > I want to compare the protein results by simulating six systems in personal > computer has Gromacs version 3.3.1, due to delay of running jobs in a single > computer,I want to run some of my systems in another computer contain > Gromacs version 3.3.3 but processor speed machine type everything are same > except difference in Gromacs versions. > 1.If I run half of jobs in another computer will it show any effect in > results? > 2. Is there any criteria to run the same systems in different computers? > > Any suggestions would be appreciated > Thanks in advance. > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623 _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
