Hi Ram, Yes.
Tsjerk PS. Do mind that the PBC are not preserved in that case. On Thu, Oct 2, 2008 at 7:54 PM, rams rams <[EMAIL PROTECTED]> wrote: > Dear users, > > While doing the least squares fit, if I choose the "protein" as input group > and "system" as output group, does it mean that the protein coordinates are > rotated to give the best fit and the coordinates of the solvent and ions are > modified with the same rotation matrices used for the protein fit ? > > Ram. > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623 _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
