Hi Users, I already simulated a protein system for 25ns in personal computer has gromacs version 3.3.1. Later I have started same protein system but few changes in few residues compare with earlier system. Due to the huge system and moreover I need to run three more systems( total four) result systems are running very slowly. So I decided to run all these systems in cluster has version 3.3.3. Will it show any effect or give bad results if I compare newly started systems with earlier system(which ran it for 25ns).
Any suggestion would be appreciated Thanks in advance.
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