ravi sharma wrote:
Hello everyone
is there any idea how can i calculate rmsd for a given helix or all
helix in a protein from a trejectory???
Create an index group, specifying only the residues you care to analyze, and
pass it to g_rms.
-Justin
-Ravi
Ravi Datta Sharma
Lecturer,
Bioinformatics,
Department of Microbiology,
CCS Unversity,
Meerut
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Justin A. Lemkul
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Virginia Tech
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