Hi there, I would be glad if somebody let me know how I can simulate a Nanoparticle-protein complex by GROMACS. Thank you very much.
Best, J Jahanshah Ashkani, PhD student of Biotechnology & Genetics, University of the Western Cape, Biotechnology Department, Private Bag X17, 7735 Bellville, Cape Town, South Africa [EMAIL PROTECTED] --- On Thu, 10/23/08, Abu Naser <[EMAIL PROTECTED]> wrote: From: Abu Naser <[EMAIL PROTECTED]> Subject: RE: [gmx-users] spliting clusters.pdb To: "Discussion list for GROMACS users" <[email protected]> Date: Thursday, October 23, 2008, 5:08 AM #yiv1368626862 .hmmessage P { margin:0px;padding:0px;} #yiv1368626862 { FONT-SIZE:10pt;FONT-FAMILY:Tahoma;} Hi Jochen, Thanks for your replay. I manage to do that using trjconv. However, I will keep your suggestion in my mind for future use. > Date: Wed, 22 Oct 2008 18:04:01 +0200 > From: [EMAIL PROTECTED] > To: [email protected] > Subject: Re: [gmx-users] spliting clusters.pdb > > Abu Naser wrote: > > Hi All, > > > > I have been wondering whether there is any tools for spliting clusters.pdb > > file into individual snapshots. > > If there is a TER between the structures, the shell command csplit may > be useful for you. > > Jochen > > > > > > With regards, > > > > Abu > > > > > > > > > > > > > > > > _________________________________________________________________ > > Win an Xbox 360 or £200 Top Shop Vouchers > > http://clk.atdmt.com/GBL/go/115454062/direct/01/ > > > > > > ------------------------------------------------------------------------ > > > > _______________________________________________ > > gmx-users mailing list [email protected] > > http://www.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at http://www.gromacs.org/search before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [EMAIL PROTECTED] > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > -- > ************************************************ > Dr. Jochen Hub > Max Planck Institute for Biophysical Chemistry > Computational biomolecular dynamics group > Am Fassberg 11 > D-37077 Goettingen, Germany > Email: jhub[at]gwdg.de > Tel.: +49 (0)551 201-2312 > ************************************************ > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php Get the best wallpapers on the Web - FREE. Click here! _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
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