Hi,
I'm trying to get vsites working for my DNA decamer with ffamber03. I've
added the following to ffamber03.ddb,
[ NH2 ]
; N2-CA in Adenosine/Guanine
amber99_38 planar
but pdb2gmx adds no virtual sites to the adenosines/guanines. What am I
missing here?
--
-----------------------------------------------
Erik Marklund, PhD student
Laboratory of Molecular Biophysics,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: +46 18 471 4537 fax: +46 18 511 755
[EMAIL PROTECTED] http://xray.bmc.uu.se/molbiophys
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