Hi I am a new Gromacs user.I am trying to study the adsorption of proteins on graphite surface.In mdp file I took the option pbc=full. When I am running a simulation for 5 ns, I am getting the output with out any warning. But when I am analysing the results using h_bond , g_gyrate and do_dssp, I am getting the following warning.
There were 900 inconsistent shifts. Check your topology. I think that my topology-file for infinite graphite surface is correct and I would like to know what does this "warning" really mean and can I trust the results anyway? Regards Ramesh
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