If you want to generate a kind of trajectory from the eigenvectors, I
think you can use g_nmtraj and then visualise the vibration with e.g.
VMD.
/Maria
Quoting Marudachalam S <[EMAIL PROTECTED]>:
I don't know what exactly you are looking for, but normal modes can be
visualized by freewares like Chemcraft, Molekel, etc. Hope it helps.
Marudachalam.
________________________________________
Hi All,
I am doing normal mode analysis. After getting the eigen
frequencies, is there a way we can visualize the vibrational
modes in gromacs. And even how to know which frequency
corresponds to which mode of vibration. I saw that IED is used to
visualize normal modes by integrating it with VMD. But I
installed VMD on my windows machine. So I dont think there is a
way to install IED on windows. Please let me if there are any
softwares which can visualize normal modes if so, how to get
them?
Thank you
abhigna
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