shahrbanoo karbalaee wrote:
Dear Justin/mark
would you please tell me for compare dynamic peptide what time for MD
is enough by gromacs?generally.
I think 20ns enough ,what do you think? many people suggest 120ns !!!!
It depends on the properties of your system and what you're trying to
observe. Check the literature for what others have done with systems of
similar size and type measuring the same observables as you. Many
nanoseconds is probably right.
Mark
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
