Thank you Justin for your prompt response. I installed Gromacs in the home directory of Cygwin. Actually, I can't fine the bin subdirectory in the gromacs directory. (I also can't find GMXRC anywhere.) Does this mean Gromacs cannot be installed correctly? Do I have to install gromacs again?
Hideya 2008/12/16 Justin A. Lemkul <[email protected]> > > > Hideya Nakamura wrote: > >> Hello Mark and Justin, >> >> Thank you very much for your responce. >> I edited the .bashrc file which is in my home directory. >> I opened .bashrc file using vi and added "source >> /usr/local/gromacs/bin/GMXRC" at the last line. >> And then, I started Cygwin again. However, an error mesage (bash: >> /usr/local/gromacs/bin/GMXRC: No such file or directory) is showed when I >> start Cygwin. In addition, when I enter the command "luck" for gromacs, I >> can't see the correct responce (i.e. "Whatever Happened to Pong ?" (F. >> Black)) >> Could you please tell me your suggestion? >> I am using Cygwin on Windows Vista Enterprise. >> > > Where did you install Gromacs? The GMXRC script should be in the bin > subdirectory of whatever prefix you specified during configuration. If your > environment is finding luck, then try "which luck" to locate the PATH to > Gromacs. > > -Justin > > >> Hideya >> >> >> 2008/12/15 Mark Abraham <[email protected] <mailto: >> [email protected]>> >> >> Hideya Nakamura wrote: >> >> Hello, >> >> I try to install GROMACS using Cygwin on my Windows PC. >> >> I have already installed fftw, and then I will install GROMACS >> based on a instruction on wiki.gromacs.org >> <http://wiki.gromacs.org> <http://wiki.gromacs.org/> >> (http://wiki.gromacs.org/index.php/Cygwin_HOWTO). >> >> >> In this instruction, there is a description "#6 Edit your login >> files to source /usr/local/gromacs/bin/GMXRC >> >> (or manually add /usr/local/gromacs/man to the MANPATH and check >> that /usr/local/bin is in the PATH)." >> >> However, I can't edit my log in files. Could someone give me how >> to edit my log in files by using Cygwin? >> >> >> Probably you're using bash shell, so in your home directory, edit >> the file .bashrc and add the line "source >> /usr/local/gromacs/bin/GMXRC" (or as appropriate for wherever you >> installed GROMACS), and then open a new shell. This way the GROMACS >> environment will always be configured right for you. >> >> Mark >> _______________________________________________ >> gmx-users mailing list [email protected] >> <mailto:[email protected]> >> http://www.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at http://www.gromacs.org/search before >> posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to [email protected] >> <mailto:[email protected]>. >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >> >> >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> gmx-users mailing list [email protected] >> http://www.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at http://www.gromacs.org/search before >> posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >> > > -- > ======================================== > > Justin A. Lemkul > Graduate Research Assistant > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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