I want to know if there is any way in gromacs where i can complex a docked ligand mol2 file with the parent receptor protein. i have the mol2 file file consisting of the translated coordinates for the ligand. my desired output is one pdb file for the docked ligand-receptor complex.
-- Shirin Awasthi M.Tech (CSB) Center for Computational Biology and Bioinformatics, School of Information Technology, Jawaharlal Nehru University, New Delhi, 110067 INDIA.
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