Dear Gromacs Users,
I created a starting structure that includes 100 n-dodecane molecules ( pdb
file ) using packmol. And I want to use the packmol pdb file in Gromacs 3.3 .
Can I directly start generating Gromacs top and crd file with using pdb2gmx ?
For example to use a packmol pdb file in Amber it is necessary to add TER cards
betwen each seperate molecule. Are there anything like that I must do for using
packmol pdb file in Gromacs ? And units in packmol pdb file is angstrom . So
Should I convert units to nm ? Finally What is the latest stable version of
Gromacs ? I think Gromacs 4.0.3 is still a beta version ?
Thanks in advance!
Regards
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