Dear all, I want to insert polymer in the aqueous phase of the bilayer.when i read through the mailing list i found that this can be done in three ways
1.By using genbox command genbox -cp polymer.pdb -cs bilayer.pdb -o merged.pdb this results in the insertion of polymer molecules to the centre of the bilayer.what has to be done if i want to insert that just above the aqueous phase of the bilayer. 2.If this can be done with vmd using move-> then save cordinates, then tell me clearly how it can be done. 3.If this can be done with making a hole and inserting the polymer into this hole by means of perl script.May i know where it is avilable? Thanks for giving your valuble time to read this mail -varsha _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
