Dear all, I am doing a protein simulation for 20ns in single processor machine. after 11.1ns when I am trying to rerun mdrun its coming out with the following error. -------------------------------------- Inner product between old and new vector <= 0.0! constraint #0 atoms 1 and 2 Warning: 1-4 interaction between 1 and 7 at distance inf which is larger than the 1-4 table size 2.400 nm These are ignored for the rest of the simulation This usually means your system is exploding, if not, you should increase table-extension in your mdp file or with user tables increase the table size MPI process rank 0 (n0, p20175) caught a SIGSEGV. ----------------------------- Can anybody please give me some clue to solve this? Thanks in advance Supti Mukhopadhyay
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