Respected all I drew the structure using the drawing tool available in PRODRG server then I went for topology file generation,but the server is deleting almost all the hydrogen atoms while writing the topology file for gromacs can any one tell me why it is doing like this?
another question I got that is how to change gromacs topology file to charmm topology file (I know for bond length and angle........but for dihedral(improper and proper)) actually i want toi know which function gromacs is using for the calculation of dihedrals.......... thanx in advance PRASUN (ASHOKA)
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