Mark Abraham wrote:
----- Original Message -----
From: nam kim <[email protected]>
Date: Saturday, March 7, 2009 6:46
Subject: [gmx-users] gromac 4.0.4 g utilities freeze the OS with Out of Memory
To: [email protected]
I have experienced OS (RedHat Enterprise) for a hour or 3 hours
whiling using gromacs 4.0.4 g-utilities such as g_vanhove.
My log error messages are:
Out of Memory g_vanhove_mpi
Out of Memory g_anaeig_mpi
Are g-utilites of Gromacs 4.0.4 buggy?
Not on this evidence. See
http://wiki.gromacs.org/index.php/Errors#Cannot_allocate_memory
Also, were these utilities actually compiled with mpicc? I don't believe any of
the code is intended for parallel use except for mdrun. So if you are trying to
run these tools in parallel, or if they were compiled improperly, then they will
probably cause problems.
-Justin
Mark
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
--
========================================
Justin A. Lemkul
Graduate Research Assistant
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
