Dear all,
I am using DMPC lipid bilayer from teleman sir
website to insert my protein in this lipid bilayer .I have done this by
using command genbox. After that when I have run the command -
pdb2gmx -f tap-in-dmpc.pdb -o tap-in-dmpc.gro -p tap-in-dmpc.top -i
tap-in-dmpc-itp -ff oplsaa
Error like this-
There are 0 hydrogen bonds
Warning: 'DMP' not found in residue topology database, trying to use 'DMSO'
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Program pdb2gmx, VERSION 4.0.3
Source code file: pdb2gmx.c, line: 429
Fatal error:
Atom C1 in residue DMSO 1 not found in rtp entry with 10 atoms
while sorting atoms
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so please tell me how can I add DMP in residue topology database if anyone
has knowledge about this. And please if also u know about any site of lipid
bilayer from where i can download lipid bilayer then let me know.
thanks in advance
Nitu Sharma
School of life siences
Jawaherlal Nehru University
New Delhi ,India
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