oguz gurbulak wrote:
Dear All,
I want to use the partial charges that were generated with Gaussian 3 for my molecules. How can I adopt the charges into the Gromacs ? Could you give me some information about this procedure ?

Atomic charges are specified in the "charge" column of the topology. If you have charges you want to use, write them in the .top/.itp yourself.

-Justin

Sincerely,


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--
========================================

Justin A. Lemkul
Graduate Research Assistant
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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