Hongyan Xiao wrote:
Dear gmx-users,
When I parallel install gromacs-4.0.4. I encountered the problem. The
following is my installation steps.
Step 1: install fftw-3.1.2
# cd fftw-3.1.2
# ./configure --enable-float --enable-mpi -enable-threads
# make
# make install
Step 2: install gromacs-4.0.4
# cd gromacs-4.0.4
#./configure --enable-mpi --with-fftw3 --program-suffix=_mpi
--enable-shared --enable-sse
# make
then I encountered the following errors:
mpicc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o
.libs/coupling.o .libs/domdec.o .libs/domdec_con.o
.libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o
.libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o
.libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o
.libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o
.libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o
.libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o
.libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o
.libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o
.libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o
.libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o
.libs/gmx_fft_fftw3.o -Wl,--rpath
-Wl,/usr/local/gromacs-4.0.4/src/gmxlib/.libs -Wl,--rpath
-Wl,/usr/local/gromacs/lib ../gmxlib/.libs/libgmx_mpi.so -L/usr/lib64
-lxml2 -lnsl -lfftw3f -lSM -lICE -lX11 -Wl,-soname -Wl,libmd_mpi.so.5
-o .libs/libmd_mpi.so.5.0.0
ld: /usr/local/lib/libfftw3f.a(mapflags.o): relocation R_X86_64_32S
against `a local symbol' can not be used when making a shared object;
recompile with -fPIC
<snip>
How to solve these problem? Hope for your help. Thank you very much!
Start by not trying to make shared objects?
Mark
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