Jacob Harvey wrote:
Dear all,
I appear to be having problems with my pdb file for gromacs. If someone
could help me out that would be awesome. I enter the following code to
run pdb2gmx:
pdb2gmx -f test.pdb
and then I select a force field. I have selected OPLS-AA/L all-atom
force field (2001 aminoacid dihedrals). Once I select the force field I
get the error
"Fatal error:
Residue '2' not found in residue topology database"
See
http://wiki.gromacs.org/index.php/Errors#Residue_.27XXX.27_not_found_in_residue_topology_database
Mark
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