Dear GROMACS Users, I'm trying to use g_hbond (v4.0.3) to analyze a simulation which was generated with NAMD (trajectory was converted to .trr w/VMD). The g_hbond requires (i) a trajectory file, and (ii) a 'run input file' (tpr/tpa/tpb). How do i generate this tpr/tpa/tpb file? Is there any way I can use a plain PDB file for this?
-Dima _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
