Dear Mark
Thanks for your consideration.
I am replying you again I think it will be more easy for u in understanding
my problem.
as u ask- how many atoms is------Protein A- 5244
Protein B- 4658
And in one dmpc molecule there is 46 atoms so in 128 it is 5888
atoms
> can u suggest me how it is helpful in making correct topology file.
As you wrote in your mail you should make two # ifdef POSRES section does it
means separatly before addind .itp file of Protein A and Protein B????????
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