nitu sharma wrote:
Dear Mark
Thanks for replying. one thing I want to ask i.e can u explain
me in brief way why steepest descent converted into machine precision
and E.M can't completed total step given in parameter file .
One thing happen during this i.e even after applying position restrain
force constant-100000 ,the protein structure being disturbed .
Please help me in solving these two problem.
I can't understand what you're asking.
EM is like playing blindfold golf. Even if you know you're in a bunker
and you know how big the bunker is, you still don't know the direction
of the green or how hard to swing the club to get the ball onto it.
In some ways EM is harder than golf... if you aren't swinging the club
hard enough, you won't always know you're still in the same bunker.
Mark
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