Hi all users, I want to get some snap shots from VMD through inputing my gro and trr file to the VMD. But I always find that I can not get the bond connection among the atoms and then, I try to use the dynamic bonds to solve this problem but another problem is that when I define a value for the cutoff distance, the bonds which don't exist among the atoms in the original shape will also come up .
Except the dynamic method to figure out this problem, I wonder whether there are other ways to fix this problem. Thank you for any suggestions. Yang _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
