Hello, I was following the steps in Justin Lemkul's tutorial for insertion of a protein in a lipid bilayer and have come accross a problem right after using inflategro's script from Tieleman's website. It says there that I should run an energy minimization and then continue with the steps of the tutorial. Well, I have used the output structure from inflategro to run an energy minimisation using grompp/mdrun using a steepest descent algorithm. The problem is that when I type the command:
grompp -f em_steep.mdp -c inflatedbilayer.gro -p topol.top -o inflatedbilayer.tpr The following errors appear: ERROR 1 [file topol.top, line 523]: No default G96Angle types ERROR 2 [file topol.top, line 794]: No default Proper Dih. types It seems that I have made some mistake with the forcefield's parameter files, but I have tried to do everything all over again and the same errors occur. Has anyone had any similar problem? I would appreciate some help if possible. Thank you FabrÃcio Bracht _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
