nitu sharma wrote:
Dear all
I want to ask one basic question i.e is it possible to
do simulation of DNA model with gromacs ? If it possible which force
field will be suitable for this?
Yes. Check out the force field .rtp files to see which contain parameters for
nucleic acids. You may want the AMBER ports:
http://chemistry.csulb.edu/ffamber/
-Justin
I am waiting for yours reply.
thanks a lot in advance.
Nitu sharma
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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