Dear Mark
Thanks for your kind reply . Actually I am just starting the
simulation of DnA-protein complex using gromacs. I got the amber charged
force field ( to find DNA residues) from golovin_at_genebee.msu.su" and "
burnnick_u_at_rambler.ru" this site . The name of force field is ffoplsaano
.
BY using this I given the command like this-
pdb2gmx -f dbd.pdb -o dbd.gro -p dbd.top -i dbd.itp -ff oplsaano
Then I am getting error like this-
Program pdb2gmx, VERSION 4.0.3
Source code file: h_db.c, line: 96
Fatal error:
Error in hdb file ffoplsaano.hdb:
Wrong number of control atoms (2 iso 3) on line:
1 1 N -C CA
Can u please help me in solving this problem.?
What does mean 2 iso 3?
Nitu Sharma
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