Hi,
I think the manual is pretty clear on this:
constraints:
none
No constraints except for those defined explicitly in the topology, i.e. bonds
are represented
by a harmonic (or other) potential or a Morse potential (depending on the
setting of morse) and angles by a harmonic (or other) potential.
Berk
> Date: Sat, 16 May 2009 12:04:09 +1000
> From: [email protected]
> To: [email protected]
> Subject: Re: [gmx-users] Constraints specified in .mdp as well as in .top
> files
>
> Vishwanath Dalvi wrote:
> > Thank you for your response. I am still unclear as to how the whole
> > thing works (and the manual is no help).
> >
> > If I do specify (in the .mdp file) something like constraints =
> > all-bonds, will that override the harmonic-bond interactions specified
> > in the .itp files?
>
> Don't know. Check the manual, or try it and see. Either your .log file
> output or inspection of gmxdump of your .tpr might be useful here.
>
> Mark
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