Hello! Just like Manik Mayur suggested, the problem should be the links: Gromacs gives you the possibility to create links to /usr/bin directory (ot something similar). If you didn't do that, one of the option is trying to run the programs using the full path. Instead of using pdb2gmx, try to use /usr/local/gromacs/bin/pdb2gmx. Replace "/usr/local/gromacs" with the directory where you install gromacs. If you didn't choose anything it probably is /usr/local/gromacs.
I hope this can help Nuno Azoia On Tue, 2009-06-02 at 12:21 +0530, Samik Bhattacharya wrote: > hi,I > > i am facing a lot of troubles in installing Gromacs in my Redhat > machine..I've followed all the instructions given in the manual as > well as in the website. ialso have installed fftw,its compiling with > no problem. . but whenever i run pdb2gmx or command lke that its > giving an error "command not found". a little help regarding this > matter will be very encouraging. > thankx > Shamik > > > > ______________________________________________________________________ > Explore and discover exciting holidays and getaways with Yahoo! India > Travel Click here! > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- Nuno Gonçalo Azoia Lopes Finishing Research Laboratory Textile Engineering Department Universidade do Minho Campus de Azurém 4800-058 Guimarães Portugal Tel: +351 253 510 280 - Ext: 517 289 Fax: +351 253 510 293 Mobile: +351 965 382 487 E-mail: [email protected] _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
