Hello, every body. I have running a MD for 10ns. However, after 5ns part of protein will running out of the box and be located at other part of the water box. And the whole structure seems ver strange. It seems that it was caused by the mass translation but I have used the comm_mode=Linear. Any suggestions?
-- Zhen Chen, Department of Bioprocess and Biosystem Engineering, Hamburg University of Technology, Denickestr. 15, D-21071, Hamburg,Germany Tel.: ++49 (0) 40 42878-3172, Fax: -3172, e-mail: [email protected]
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