On Sat, Jun 13, 2009 at 5:14 PM, Florian Dommert < [email protected]> wrote:
> * Justin A. Lemkul <[email protected]> [2009-06-13 07:31:17 -0400]: > > >> >> Ms. Aswathy S wrote: >> >>> Hi, >>> >>> after equlibration of my protein and ligand I tried to create the energy >>> file ans well as the to display the trajectories using ngmx option,. But it >>> shows the follo: error, >>> >>> Xlib: connection to ":0.0" refused by server >>> Xlib: No protocol specified >>> >>> Can't connect to X Server. >>> Check your DISPLAY environment variable >>> >>> >> Seems like your X environment is somehow not properly configured. >> > If you are working through ssh, then you can : $export DISPLAY=<your current computer's ip>:0.0 Or you are tunneling through a SSH connection. There are several > possiblities: > > 1. Try ssh -X to login, this could solve the problem, if you are in > principle allowed to use X11 tunneling. > 2. In case this does not work either it can be that you are not allowed > to tunnel X11. > > However take care that you also need a properly configured XServer > running on your own system not just on the host you login. So in case > you use Windows or MacOS make sure this is the case. > > Flo > > > > >> ************************************************ >>> >>> also the g_energy command shows that , >>> >>> Program g_energy_mpi, VERSION 3.3.3 >>> Source code file: enxio.c, line: 239 >>> >>> Fatal error: >>> Energy file eq_2ps_ener.edr not recognized, maybe different CPU? >>> >>> >> What does gmxcheck tell you about the file. Perhaps it has been corrupted >> in some way. >> >> Also, you may want to work with a more current version (4.0.5) to utilize >> the newest features and bug fixes. >> >> -Justin >> >> >>> Can any one help me, please??? >>> >>> Thanks, >>> Aswathy >>> ASBT >>> Dept. Biotechnology >>> Ext. 3108 >>> _______________________________________________ >>> gmx-users mailing list [email protected] >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at http://www.gromacs.org/search before >>> posting! >>> Please don't post (un)subscribe requests to the list. Use the www >>> interface or send it to [email protected]. >>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >>> >>> >> -- >> ======================================== >> >> Justin A. Lemkul >> Ph.D. Candidate >> ICTAS Doctoral Scholar >> Department of Biochemistry >> Virginia Tech >> Blacksburg, VA >> jalemkul[at]vt.edu | (540) 231-9080 >> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >> >> ======================================== >> _______________________________________________ >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at http://www.gromacs.org/search before >> posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >> > > -- > Florian Dommert > Dipl.-Phys. > > Institute for Computational Physics > University Stuttgart > > Pfaffenwaldring 27 > 70569 Stuttgart > > Tel: +49 - 711 / 6856-3613 > Fax: +49 - 711 / 6856-3658 > > EMail: [email protected] > Home: > http://www.icp.uni-stuttgart.de/~icp/Florian_Dommert<http://www.icp.uni-stuttgart.de/%7Eicp/Florian_Dommert> > > !! PGP-ENCODED emails preferred !! > > _______________________________________________ > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > Manik Mayur Graduate student Microfluidics Lab Dept. of Mechanical Engg. IIT Kharagpur INDIA
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