On Jun 22, 2009, at 4:43 PM, akalabya bissoyi wrote:
hello everybody
i am running my gromacs in PC, it takes me lot of time for running
my simulation.
Can anybody help me regarding parallel computing using my PC so that
my simulation will be faster.
Any materials/protocol so that i can make my own cluster using my
PC (minimum resources) ?
If you have more than one core on your PC you can do parallel
simulations using MPI.
Install some MPI library, e.g. OpenMPI or LAM and afterwards compile
Gromacs with
--enable-mpi and run with mpirun -np <number of cores> mdrun -s ...
Carsten
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