Alexandre Suman de Araujo wrote:
Hi Mark

Do you know any site/paper/book which clearly discuss the use of other network paradigms (infiniband, myrinet, etc) to perform fair parallel MD simulations?

No. GROMACS will work over any network across which you can run MPI. For MD, you are likely to get what you pay for with that network. You can search the archives of gmx-users for some discussion here.

Mark
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