Hi, I'm trying to run a simple simulation of a DNA hairpin pdb entry 1pqt. When I run pdb2gmx with the G43a1 force field I get the error:
Warning: 'DG' not found in residue topology database, trying to use 'DGUA' ------------------------------------------------------- Program pdb2gmx, VERSION 4.0.5 Source code file: pdb2gmx.c, line: 429 Fatal error: Atom O5' in residue DGUA 1 not found in rtp entry with 25 atoms while sorting atoms ------------------------------------------------------- any hints? Thanks, Dave Hassan _______________________________________________ gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
