nikhil damle wrote:
Hi,
What are the units of RMSD (nm or ang) in which g_rms calculates the RMSD between two structures ?


The header of the .xvg file (y-axis legend) tells you the units. All units and conventions are explained in Chapter 2 of the manual.

-Justin

Regards,
Nikhl

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========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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