Hi,
Please keep all Gromacs-related correspondence on the gmx-users list.
Gromacs ignores CONECT records when assigning bonds. You must define bonds in
the .rtp files.
-Justin
Mohammad Ghahramanpour wrote:
Hello Dear
I thought you can draw your polymer (getting bonds between your
momomers) in hyperchem software and save in with PDB format.
And then change your atom name in the PDB file as well as your force
field .rtp file.
I think this might be usefull
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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