Hello, More specifically, I am unsure as to the procedure of inflating and minimizing a bilayer using "InflateGRO". In the tutorial at:
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/index.html I followed it successfully up to the inflation step, but I do not know specifically what parameters to run the energy minimisation. Please advise. Thank you. Nancy On Wed, Jul 29, 2009 at 7:49 PM, Justin A. Lemkul <[email protected]> wrote: > > > Nancy wrote: > >> Hello, >> >> I am trying to run energy minimisation on a lipid bilayer (downloaded >> from: http://moose.bio.ucalgary.ca/files/dppc128.pdb). I inflated the >> bilayer using "InflateGRO" however, when I try to run the minimisation, it >> seems to display the un-inflated bilayer. Please advise. >> >> > Without seeing the command lines that you're issuing, we can only assume > you are doing something wrong. > > -Justin > > Thank you. >> >> Nancy >> >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at http://www.gromacs.org/search before >> posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >> > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > _______________________________________________ > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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