Warren Gallin wrote:
Hi,
Is there any way to set the directory where the output from mdrun will
be written if I do not want to have it in the directory from which I am
giving the command?
Either specify it explicitly or use an environment variable, i.e.:
mdrun -o ./my/target/directory/traj.trr
or
export MY_DIR=/my/target/directory
mdrun -o $MY_DIR/traj.trr
Of course, the use of export/setenv/etc. will depend on your environment.
-Justin
Thanks,
Warren Gallin
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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