Hi Justin, Thanks for the expedient reply. I referred MARTINI but after converting 1A8G.pdb to 1A8G_CG.pdb i.e. CG structure of protein I dnt know how to make the topol.top and conf.gro files for that and also I am not able to generate the posre.itp file with this CG structure because it says the fatal error : Incomplete ring of HIS 69. So I don't know how to proceed now and do my simulations.
Thanks, Sunny _______________________________________________ gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
