abhijit kayal wrote:
Hi,
I am going to do the normal mode analysis of 1OMB.pdb.For this purpose I
have to run the GROMACS in double precision .For this i went through the
manual and made necessart changes in .mdp file.But when I gave grompp_d
it showed like this
[abhi...@scfbioserver 1omb]$ grompp_d -v -f em.mdp -c b4em.gro -o em.tpr
-p 1OMB.top
-bash: grompp_d: command not found.
I am using GROMACS 4.0.4 version .So my question is why
it showed like this.
Did you specify --program-suffix=_d when doing the double-precision
installation?
-Justin
Thank you
Abhijit Kayal
IIT Delhi
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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