Samik Bhattacharya wrote:
hi all, i am analyzing a trajectory of a membrane protein embedded in DMPC bilayer. for this i'm using deuterium order analysis where i have created two different index groups for the acyl chains. now when i am running g_order its giving an error message like

Program g_order, VERSION 4.0.5
Source code file: gmx_order.c, line: 362

Fatal error:

grp 1 does not have same number of elements as grp 1

can anybody tell me where this kind of error generating from? and how to solve this problem? is there any problem in the index group creation? a little help would be very encouraging....

Yes, your index groups are wrong.  There is a step-by-step how-to on the wiki:

http://oldwiki.gromacs.org/index.php/g_order

-Justin

Thanking You all
Shamik


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--
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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